Question 1: Can I use the lysis buffer from the Cdc42 G-LISA activation assay kit ((Cat. #BK127) to prepare samples for the other G-LISA assays?
Answer 1: The Rac1 and RhoA G-LISAs use the same lysis buffer (Part # GL36). The Cdc42 G-LISA kit ((Cat. #BK127) uses a different lysis buffer (Part # GL35). The buffer components are proprietary, but in general, the lysis buffers contain a buffer, detergents and salts. GL35 is about 2X more concentrated than GL36 in regard to salt and detergent concentrations. So you could make the extracts in GL35 and dilute them in GL36 for the Rac1 and RhoA assays. As a reminder, be sure to aim for approximately 0.5-1 mg/ml protein concentration when performing the lysis. At higher concentrations, you are likely to have significant loss of signal due to proteolysis, increased phosphatase/kinase activity and increased GAP activity.
Question 2: How many cell culture plates can I process at one time during the lysis step?
Answer 2: We recommend that from the point at you add lysis buffer to the plate on ice to aliquoting and snap-freezing the lysate samples in liquid nitrogen, no more than 10 min are allowed to elapse. After 10 min on ice, we find that GTP bound to GTPases (activated GTPases) undergoes rapid hydrolysis. Rapid processing at 4°C is essential for accurate and reproducible results. The following guidelines are useful for rapid washing of cells.
Washing
a. Retrieve culture dish from incubator, immediately aspirate out all of the media and place firmly on ice.
b. Immediately rinse cells with an appropriate volume of ice cold PBS (for Cdc42 activation, skip this step and simply aspirate the media) to remove serum proteins.
c. Aspirate off all residual PBS buffer. This is essential so that the Lysis Buffer is not diluted. Correct aspiration requires that the culture dish is placed at a steep angle on ice for 1 min to allow excess PBS to collect in the vessel for complete removal. As noted, the time period between cell lysis and addition of lysates to the wells is critically important. Take the following precautions:
1. Work quickly.
2. Keeping solutions and lysates embedded in ice so that the temperature is below 4°C. This helps to minimize changes in signal over time.
3. We strongly recommend that cell lysates be immediately frozen after harvest and clarification. A sample of at least 20 &mu, l should be kept on ice for protein concentration measurement. The lysates must be snap frozen in liquid nitrogen and stored at -70°C. Lysates should be stored at -70°C for no longer than 30 days.
4. Thawing of cell lysates prior to use in the G-LISA assay should be in a room temperature water bath, followed by rapid transfer to ice and immediate use in the assay.